PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00398g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 369aa    MW: 41387.3 Da    PI: 7.7054
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00398g00005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-0885105526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+ f++ G C++Gd C +aHg
  Peaxi162Scf00398g00005.1  85 PCPEFQK-GACQRGDLCEYAHG 105
                               8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00356194568IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-680106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.94380107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-484107IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-685105IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MENFKIQIVS NYSIHFGICW TANMTMNNLA IENNFNTTYE FMMYSFKTRP CTRANSHCWT  60
ECPFFHPGEN ARRRDPIKYR YSCVPCPEFQ KGACQRGDLC EYAHGVFECW LHPAQYRTRV  120
CKYDMGLIPG SPFPVSVMSP SPLTPPMSPS ASGISSIGCP QQYVRALHLP GRFLHSSHLQ  180
SSLNARYIPA ADLRSHPEFD VQQQQIPNQL SYLSQPNMNS NSLNHSARPM TLNHANLENL  240
FSAESSSPRY SDQALAQAGF SPTHRSDACS QFRQQQTLLS PINTNFSPKH VQQQVRSLSS  300
RELGSNVSAI VGSPTDTWSK WGTATGNPDW TVNTGEFVGL SRSSSFEFAN HGEGPDVSWV  360
LRSVLEESP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0137761e-89BT013776.1 Lycopersicon esculentum clone 132664R, mRNA sequence.
GenBankHG9754491e-89HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755221e-89HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543711.11e-155PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotQ10EL11e-100C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0V0INN01e-144A0A0V0INN0_SOLCH; Putative zinc finger CCCH domain-containing protein 30-like
TrEMBLM1CJN81e-144M1CJN8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000689261e-143(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2530022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-79CCCH-type zinc finger protein with ARM repeat domain